BIOCOMP'09: July 13, 2009 Schedule
Last modified
2009-06-20 13:20
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6:30am - 5:00pm: REGISTRATION (Second Floor, Conference Lobby: 1-5)
08:30 - 08:45am: WORLDCOMP'09 Opening Remarks - July 13, Monday:
Prof. Hamid R. Arabnia (General Chair & Coordinator)
University of Georgia, Georgia, USA
(LOCATION: Lance Burton Theater)
08:45 - 09:40am: Keynote Lecture - July 13, Monday:
Grid Computing
Prof. Ian Foster
Father of Grid Computing
Distinguished Professor of CS & Director, Computation
Institute, University of Chicago & Argonne National Lab.,
Illinois, USA
(LOCATION: Lance Burton Theater)
09:45 - 10:40am: Keynote Lecture 2 - July 13, Monday:
Advanced Nanotechnology: Advanced Computing on the Critical Path
Dr. K. Eric Drexler
Father of Nanotechnology
Chief Technical Advisor, Nanorex
(LOCATION: Lance Burton Theater)
10:45 - 11:35am: Keynote Lecture 3 - July 13, Monday:
Algorithm Design for Reconfigurable Computing Systems
Prof. Viktor K. Prasanna
Charles Lee Powell Chair in Engineering; Professor of ECE & CS;
Executive Director of USC-Infosys Center for Advanced Software
Technologies (CAST), University of Southern California, USA
(LOCATION: Lance Burton Theater)
11:40a - 12:30p: Keynote Lecture 4 - July 13, Monday:
It's Like Deja-Vu All over Again ... Again
Dr. Jose L. Munoz
Deputy Director, National Science Foundation (NSF) Office of
Cyberinfrastructure (OCI) and NSF/ICI senior advisor. Former
Director of Simulation & CS Office at the National Nuclear
Security Adm.'s Advanced Simulation & Computing (ASCI) program.
(LOCATION: Lance Burton Theater)
12:30 - 01:40pm: LUNCH (On Your Own)
01:40 - 02:40pm: BIOCOMP KEYNOTE: July 13, Monday:
Prof. Brian D. Athey
Professor of Biomedical Informatics, University of Michigan
Medical School, USA; Founding Associate Director, U-M Center for
Computational Medicine & Biology (CCMB); Head, NIH National Center
for Integrative Biomedical Informatics; Director, Biomedical
Informatics Program of Michigan Institute for Clinical & Health
Research; Peace Fellow, Federation of American Scientists; Special
Advisor to Director of the Division of Program Coordinator,
Planning, & Strategic Initiatives (DPCPSI), in the office of the
Director of the NIH.
(LOCATION: Ballroom 5)
03:00 - 03:40pm: DISCUSSION SESSION A-BIOCOMP (Refreshments will be available)
July 13, 2009 (Monday)
(LOCATION: Hallways - Ballrooms 1-5)
O. Discovery of Structural Motifs in Metalloproteins Using
Protein Structural Alphabets and 1D Motif-finding Methods
Shih-Yen Ku, Chih-Ying Wei and Yuh-Jyh Hu
National Chiao Tung U. & University of Southern California, USA
O. Combinational Chemotherapy Drug Scheduling using Fuzzy Adaptive
and Neighborhood Operator Particle Swarm Optimization
Harish C. Soundararajan, V. Kumar Leelakrishnan, M. Sivanandham
Sri Venkateswara College of Engineering Pennalur, India
O. An Efficient Marker-based Registration Method Using Projection
Model Estimation with a Gaussian Weighting Function for TEM
Image Alignment
Ho Lee, Jeongjin Lee, Hyunna Lee and Yeong Gil Shin
Seoul National U., South Korea & The Catholic U., South Korea
O. Human Tissue Classification: an In Silico Approach
Guozhen Liu, Elvena Fong, Xiao Zeng
SABiosciences Corporation, Frederick, Maryland, USA
O. gSpider: a New Tool for Data Integration and Visualization
Elvena Fong, Xiao Zeng, and Guozhen Liu
SABiosciences Corporation, Frederick, Maryland, USA
O. Genetic Characterization and Population Structure of Arabian
oryx (Oryx leucoryx) Based on Microsatellite Analysis
Dr. Mohammad A. Khidhir, K. Praveen Kumar, Marwa Al-Aseer
Department of President's Affairs, Al-Ain, UAE
O. Generalized Method for 1-D Biosignals Compression
Luz Angela Aristizabal Q, Alvaro Ivan Morales P-
U. Autanoma de Manizales & U. Nacional de Colombia & U. De Cadas, Colombia
O. Nano Bio Computing - Synthesis of a Nano Bio Computer Using
DNA and Nanorobots
G. Vaidyanathan; Vickram College of Engineering, India
O. There will also be a number of other papers.
SESSION 1-BIOCOMP: PROTEIN STRUCTURE, FUNCTION & PROTEOMICS
Co-Chairs: Dr. Mark Clement* and Dr. Wei Zhong**
*Brigham Young University, Provo, Utah USA
**University of South Carolina Upstate, USA
July 13, 2009 (Monday); 03:40pm - 06:00pm
(LOCATION: Ballroom 5)
03:40 - 04:00pm: Accurate Prediction and Recognition of Subfamilies of G
Protein-Coupled Receptors from Amino Acid Sequences
Huixiao Hong, Qilong Hong, Weida Tong
US Food & Drug Administration, USA & University of Arkansas, USA
04:00 - 04:20pm: A Protein Sub-structure Surface Comparison Method Using Distance Matrix
Nam Hee Yu, Kwang Su Jung, Yong Je Chung, Keun Ho Ryu
Chungbuk National University, Korea
04:20 - 04:40pm: Conformational Sampling of Protein Loop Structures by Self-Guided
Langevin Dynamics
Michael S. Lee and Mark A. Olson
U.S. Army Research Laboratory, USA
04:40 - 05:00pm: In silico Proteome Parsing Analysis to Identify Core Sets of
Proteins in Bacteriophages to Aid in Their Classification
Padmanabhan Mahadevan and Donald Seto
George Mason University, USA
05:00 - 05:20pm: Analyzing Flexibilities of Lysozyme Mutations for Protein Surface
Comparison with Structure Factor and Phase Angle
Kwang Su Jung, Nam Hee Yu, Keun Ho Ryu, Yong Je Chung
Chungbuk National University, Korea
05:20 - 05:40pm: Predicting Protein Complex Core Components Through Integration
of Different Types of Interaction Data
Patrick Tan and Frederic Pio
Simon Fraser University MBB Department, Canada
05:40 - 06:00pm: FREE SLOT
06:00 - 09:00pm: KEYNOTE & INVITED PRESENTATIONS + TUTORIALS
(Please see the lists at the begining of this booklet)
09:10 - 11:30pm: CONFERENCE RECEPTION DINNER & PLANNED BANQUET KEYNOTE
July 13 - Monday
(LOCATION: Ballrooms 1-5)
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